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TRAINING AND SERVICES

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We offer a unique pipeline from sample processing, staining (histology) and image acquisition (bioimaging) through to data analysis, providing publication-ready results.
TRAINING PROGRAMMES 
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Histological techniques 

Our tailored 2-hour training session focusses on histological techniques to meet the specific needs of our clients. With over a decade of experience in sample preparation including cryo-sectioning and formalin-fixed paraffin embedded tissue, we offer expert training in routine staining methods such as H&E, AB&PAS, sirius red and oil droplets, as well as more advanced techniques such as direct and indirect immunofluorescence staining and fluorescence in-situ hybridization (FISH).

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Laser scanning confocal microscope FV3000 

This comprehensive 6-hour training, divided into three sessions, combines a theoretical and practical approach to fluorescence microscopy and laser scanning confocal microscopy using the Olympus FV3000 LSCM. We guide you through sample acquisition, from two-dimensional imaging to more complex recording settings, tailored to your requirements. 

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Incucyte S3 

Our 1-hour training session covers the basics of Incucyte S3 acquisition conditions and applications. Additionally, we introduce the image analysis capabilities available with this equipment.

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Whole slide scanner VS200

This 2-hour training session using the latest generation Olympus VS200 whole slide scanner includes practical examples of sample acquisition and navigation. We also provide a basic introduction to QuPath image analysis software.  

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Image analysis workshop

Our 6-hour hands-on image analysis workshop is divided into two sessions. The first session covers the basics of digital image generation and analysis, including the  various forms of image collection, along with basic image processing and analysis techniques. The second session covers complex image analysis, including video editing and a deep dive into histocytometry or polychromatic microscopy.

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SERVICES

 

We offer a comprehensive pipeline from sectioning to staining, imaging and data analysis, delivering publication-ready results. Using our histology suite, advanced fluorescent microscopy facility and bioimaging analysis tools we help you understand cellular distributions, interactions and networks in the context of the tissue sections or organs of interest.

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Histology 

We tailor our sample processing services to meet the specific needs of our clients, offering a range of sectioning services from cryo-sectioning and compresstome, to full paraffin embedding and formalin-fixed paraffin embedded sectioning. Our services can include: 

  • Customised consultation for sample preparation and panel design   

  • Fixation, snap freezing and sectioning (offered as a pipeline or individually)  

  • Immunofluorescent polychromatic staining or histochemistry staining including H&E, PAS, sirius red and masson trichome

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Bioimaging  

Our bioimaging services are designed to meet your experimental goals, providing high-resolution imaging using laser scanning confocal microscope and overview imaging with whole slide scanning. Our services can include: 

  • Imaging validation (control acquisition and cross-talk validation) 

  • Data recording and file handling  

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Image Analysis

We transform your images in data sets using software such as ImageJ, CellProfiler or QuPath software to extract valuable information. Our analysis services can include: 

  • Image curation and image quality assurance  

  • Image analysis pipeline design and test  

  • Data confirmation and validation  

  • Image processing and data reporting 

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CONTACT US

Malaghan Institute of Medical Research
Gate 7, Victoria University
Kelburn Parade, Wellington

 

PO Box 7060
Newtown, Wellington 6242
New Zealand

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